[ Previous chapter ][ This chapter ][ Next chapter ] database availability in Sequence Searching with Heuristic Methods database availability in Obtaining Data from Local Databases database availability in Programs database creation in Use of Specific Searching Libraries database searching in Profiles database searching in Programs database searching in Programs database searching in Tools for Sequence Searching database searching in Use of Specific Searching Libraries database sublibraries in Use of Specific Searching Libraries database updates in Sequence Searching with Heuristic Methods database updates in Obtaining Data from Local Databases database updates in Programs databaseinformation in Principle database in Standard Environment dataset in Use of Specific Searching Libraries datatransfer in Data Transfer, Import, Handling, and Formatting debugging in JAMF Specification DECnet in In order to Connect... defining patterns in Programs delete file in File Handling Commands on Various Operating Systems delete key in During Session: No or Strange Events described below in In order to Connect... desktopsetup in Needed Equipment desktop in Needed Equipment detailed help in GCG On-Line Documentation (Command Line Version) Digital Equipment Corporation in What is an Operating System? directory anonymous ftp in Transfer of Data in between Computers directory at remote host in Transfer of Data in between Computers directory for fetch command in View (Local) Sequence Data directory for fetch command in View (Local) Sequence Data directory for key mapping file in Programs to Deal with Multiple Sequences directory for sequence work in Modification of an Existing File or Database Sequence directory for working with files in Reading Frame Estimation Programs directory in ftp in Transfer of Data in between Computers directory JAMF usage in JAMF Specification directory naming in File Handling Commands on Various Operating Systems directory navigation in File Handling Commands on Various Operating Systems directory navigation in Transfer of Data in between Computers directory problems with Lists in Use of Specific Searching Libraries disclaimer in Getting Started disclaimer in Just Another Metafile Format (JAMF) disconnect in Disconnect from the Computer discussion on additonal software in Phylogeny disk full in During Session: No or Strange Events disk problems in Problems Caused by User disk quota in Principle of the 'seqed' Program disk quota in Setup of the GCG Plotting Environment disk quota in Wisconsin Package Interface diskquota in During Session: No or Strange Events disk in Needed Equipment display in WPI in Prerequisites for all examples and instructions display in WPI in Setup of the GCG Plotting Environment display initialisation in Prerequisites for all examples and instructions display of alignment in Comparison Programs display of alignment in Comparison Programs display of compositional analysis in Composition-Counting Programs display of current sequence position in Principle of the 'seqed' Program display of dotplot improved in GCG's Implementation of Schematic Comparison display of dotplot in GCG's Implementation of Schematic Comparison display of dotplot in Schematic Comparison display of dotplot in Schematic Comparison display of escape sequence in Disconnect from the Computer display of fragment details in Composition-Counting Programs display of fragment details in Restriction Enzyme Mapping Programs display of GCG banner in GCG environment display of graphics in Comparison Programs display of graphics in Prerequisites for all examples and instructions display of graphics in Setup of the GCG Plotting Environment display of graphics in Standard Environment display of hydrophaty in Protein Tools display of job errors WPI in Wisconsin Package Interface display of local database status in GCG environment display of molecular models in Protein Tools display of mutations in Protein Tools display of output lack thereof in During Session: No or Strange Events display of output in No Connection to Remote Host display of PAUP results in Phylogeny display of pileup in Programs to Deal with Multiple Sequences display of pileup in Programs to Deal with Multiple Sequences display of reading frames in Reading Frame Estimation Programs display of remote windows in Comparison Programs display of remote windows in Find Sequences in the Databases with World Wide Web (via Network) display of remote windows in In order to Connect... display of remote windows in Prerequisites for all examples and instructions display of remote windows in Standard Environment display of remote windows in Standard Environment display of remote windows in Wisconsin Package Interface display of restriction enzymes in Restriction Enzyme Mapping Programs display of restriction maps in Restriction Enzyme Mapping Programs display of results in WPI in Prerequisites for all examples and instructions display of results in Prerequisites for all examples and instructions display of results in Setup of the GCG Plotting Environment display of result in Just Another Metafile Format (JAMF) display of secondary structure in Protein Tools display of secondary structure in Protein Tools display of sequence annotation in Reading Frame Estimation Programs display of sequence relationship in Schematic Comparison display of sequence similarity distribution in Sequence Searching with Heuristic Methods display of sequence similarity in Comparison Programs display of sequence similarity in GCG's Implementation of Schematic Comparison display of sequence similarity in Principle of Multiple Sequence Alignment display of sequence similarity in Programs to Deal with Multiple Sequences display of sequence similarity in Programs to Deal with Multiple Sequences display of sequences in View (Local) Sequence Data display of sequence in Programs to Deal with Multiple Sequences display of similarity sequence in GCG's Implementation of Schematic Comparison display of similarity in Principle of Multiple Sequence Alignment display of text in Just Another Metafile Format (JAMF) display of text in No Connection to Remote Host display of translation in Reading Frame Estimation Programs display of WINDOW output in Composition-Counting Programs display on small displays WPI in Wisconsin Package Interface display security in Standard Environment DISPLAY variable in Standard Environment DISPLAY in Comparison Programs DISPLAY in Find Sequences in the Databases with World Wide Web (via Network) DISPLAY in Protein Tools distancematrix in Phylogeny distances in Phylogeny distances in Programs to Deal with Multiple Sequences DNA alignment presentation in Comparison Programs DNA alignments vs Protein alignments in Comparison Programs DNA alphabet in Sequence Searching with Heuristic Methods DNA alphabet in Composition-Counting Programs DNA alphabet in Principle of the Analytical Comparison of Two Sequences DNA alphabet in Schematic Comparison DNA backtranslation in Translation DNA character comparison table in Schematic Comparison DNA comparison dotplots in GCG's Implementation of Schematic Comparison DNA comparison tables in Principle of the Analytical Comparison of Two Sequences DNA counterparts in Protein Tools DNA crossreferences to Protein in Principle DNA database EST section in Use of Specific Searching Libraries DNA database searching in Tools for Sequence Searching DNA database specific version in Use of Specific Searching Libraries DNA information content in Sequence Searching with Heuristic Methods DNA motif prediction in Reading Frame Estimation Programs DNA multisequence alignment in Principle of Multiple Sequence Alignment DNA pattern analysis in Reading Frame Estimation Programs DNA patterns analysis limitation thereof in Restriction Enzyme Mapping Programs DNA patterns as basis for lists in Use of Specific Searching Libraries DNA patterns in Composition-Counting Programs DNA patterns in Programs DNA patterns in Searching Patterns DNA restriction enzymes in Restriction Enzyme Mapping Programs DNA restriction enzymes in Restriction Enzyme Mapping Programs DNA searches on protein level in Sequence Searching with Heuristic Methods DNA searches on protein level in Sequence Searching with Heuristic Methods DNA searches on protein level in Searching Strategies DNA searching programs in Rigorous Searching in the Twilight Zone DNA searching vs Protein searching in Sequence Searching with Heuristic Methods DNA sequence codon distribution in Composition-Counting Programs DNA sequence comparison in GCG's Implementation of Schematic Comparison DNA sequence comparison in Schematic Comparison DNA sequence composition in Composition-Counting Programs DNA sequence composition in Composition-Counting Programs DNA sequence database translation in Translation DNA sequence databases in networks in Principle DNA sequence file extension in View (Local) Sequence Data DNA sequence format in Import of Sequences to the GCG Package DNA sequence numbering in Principle DNA sequence partitioning in Searching Strategies DNA sequence reformatting in Reformatting from RNA, DNA, MSF or other GCG Formats DNA sequence searching in Sequence Searching with Heuristic Methods DNA sequence splitting in Searching Strategies DNA sequence translation in Searching Strategies DNA sequence typing in in Principle of the 'seqed' Program DNA sequence in Protein Tools DNA to RNA conversion in Translation DNA translation in Translation DNApatterns in Restriction Enzyme Mapping Programs DNAStar format in Import of Sequences to the GCG Package documentation printed in Printed Documentation documentation in GCG On-Line Documentation (Command Line Version) documentation in Just Another Metafile Format (JAMF) documentation in Setup of the GCG Plotting Environment Doelz Reinhard in Acknowledgements Doelz Reinhard in Technical Issues: Networking DOS in What is an Operating System? dotplot improvements in Principle of the Analytical Comparison of Two Sequences dotplot improvements in Schematic Comparison dotplot improvements in Schematic Comparison dotplot in heuristic searches in Sequence Searching with Heuristic Methods dotplot in pattern identification in Creation of Patterns dotplot in WPI in Wisconsin Package Interface dotplot interpretation in Schematic Comparison dotplot output improvement in GCG's Implementation of Schematic Comparison dotplot principle in Schematic Comparison dotplot tickaxes symbol font in GCG's Implementation of Schematic Comparison dotplot with internal repeats in GCG's Implementation of Schematic Comparison dotplottype in Sequence Searching with Heuristic Methods dotplot in Creation of Patterns dotplot in GCG's Implementation of Schematic Comparison dotplot in GCG's Implementation of Schematic Comparison dotplot in GCG's Implementation of Schematic Comparison dotplot in GCG's Implementation of Schematic Comparison dotplot in GCG's 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